Massively Parallel Sequencing Data

Sample Platform Short Read
Data 		Aligned Data
(Reference Sequence:
NCBI Build 36.3) 		Genome Variants
hg18 hg19
AK1 Illumina Genome Analyzer - FASTQ
- SRA008370 		Alignment Result
(Alignment tool : GSNAP) 		- SNP (nsSNP)
- Indel
- CNV 		- SNP
- Indel
AK2 AB SOLiD - csfasta
- SRA010321 		Alignment Result
(Alignment tool : Bioscope) 		- SNP(nsSNP)
- Indel
- CNV 		- SNP
- Indel
AK3 Illumina Genome Analyzer - FASTQ
- SRA023746 		Alignment Result
(Alignment tool : GSNAP) 		- SNP (nsSNP)
- Indel
 - SNP
- Indel
AK4 Illumina Genome Analyzer - FASTQ
- SRA023747 		Alignment Result
(Alignment tool : GSNAP) 		- SNP(nsSNP)
- Indel
- CNV 		- SNP
- Indel
AK5 Illumina Genome Analyzer - FASTQ
- SRA023748 		Alignment Result
(Alignment tool : GSNAP) 		- SNP(nsSNP)
- Indel
 - SNP
- Indel
AK6 Illumina Genome Analyzer - FASTQ
- SRA023749 		Alignment Result
(Alignment tool : GSNAP) 		- SNP(nsSNP)
- Indel
- CNV 		- SNP
- Indel
AK7 Illumina Genome Analyzer - FASTQ
- SRA023750 		Alignment Result
(Alignment tool : GSNAP) 		- SNP(nsSNP)
- Indel
 - SNP
- Indel
AK9 Illumina Genome Analyzer - FASTQ
- SRA023751 		Alignment Result
(Alignment tool : GSNAP) 		- SNP
- Indel
 - SNP
- Indel
AK14 Illumina Genome Analyzer - FASTQ
- SRA023752 		Alignment Result
(Alignment tool : GSNAP) 		- SNP(nsSNP)
- Indel
- CNV 		- SNP
- Indel
AK20 Illumina Genome Analyzer - FASTQ
- SRA023753 		Alignment Result
(Alignment tool : GSNAP) 		- SNP(nsSNP)
- Indel
- CNV 		- SNP
- Indel
NA10851 Illumina Genome Analyzer - FASTQ
- SRA010320 		Alignment Result
(Alignment tool : GSNAP) 		- SNP(nsSNP)
- Indel
- CNV 		- SNP
- Indel
AK55 (Blood) Illumina HiSeq2000 - FASTQ
- ERP001071 		Alignment Result
(Alignment tool : GSNAP) 		- SNP
- Indel
- CNV 		- SNP
- Indel
AK55
(Liv Mets Lung CA)		 Illumina HiSeq2000 - FASTQ
- ERP001071 		Alignment Result
(Alignment tool : GSNAP) 		- SNP
- Indel
- CNV 		- SNP
- Indel

Transcriptome Seqeuncing Data

Sample Platform Sequence Data
Aligned Data
(Reference : NCBI Build 36.3)
AK3 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK4 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK5 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK6 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK7 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK14 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK20 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK_N1 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK_N2 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK_N5 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK_N6 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK_N7 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK_N9 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK_N14 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK_N15 Illumina Genome Analyzer - FASTQ
- Alignment Result
  (Alignment tool : GSNAP)
AK55
(Liv Mets Lung CA)		 Illumina HiSeq2000 - ERP001058
- Alignment Result
  (Alignment tool : GSNAP)

High-resolution aCGH data

▶Download Log2 Ratio Data

Log2 ratio data were extracted from feature extracted data of Agilent 24M probe CGH array.
Download

▶Download Absolute Called Log2 Ratio Data

Absolute called log2 ratio data were adjusted from feature extracted data of Agilent 24M probes CGH array using CARA software (http://cara.gmi.ac.kr)
Download

▶Absolute CNV Segments

Shown here are list of absolute CNV calls in the 30 test samples.
Download

▶CNV Elements

CNV segements were collapsed into minimally redundant CNV elements using the criteria(> 1bp overlap, > 50% reciprocal overlap, respectively).
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Genomic Medicine Institute, Seoul National University College of Medicine, 28 Jongno-Gu, Yongon-Dong, Seoul 110-799, Korea